This paper introduces the construction management of Well MSD-1， Well MAZD-1 and Well MED-2 in regard to the separate budget drilling projects carried out in Yin’e Basin from 2017 to 2019. During the implementation of the projects， with exploitation of the advantages of the Institute of Exploration Technology in drilling technology and regional business management， the practical problems have been solved， the maximum deliverables and the interdisciplinary collaborative development have been achieved， and a project management mode to achieve the dual objectives of “Geology and Drilling” has been sought out. It provides a reference for the implementation of geological survey drilling projects in the future.